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Crystal structure of the glycogen synthase from Agrobacterium tumefaciens (non-complexed form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG 4000, isopropanol, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.6 52.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.271 α = 90 b = 87.289 β = 100.29 c = 88.492 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 channel - cut Si monochromator +
cylindrical grazing incidence mirror 2002-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9792 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.97 98.2 0.072 0.055 11.4 6.7 88607 88607 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.4 85.9 0.257 0.188 5.5 3.8 9708
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 29.97 88607 88607 4397 97.8 0.2245 0.2245 0.204 0.2213 0.24 0.2574 RANDOM 31.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.1 -3.29 7.81 -2.7
RMS Deviations Key Refinement Restraint Deviation x_torsion_deg 23.3 x_scangle_it 2.74 x_mcangle_it 1.9 x_scbond_it 1.84 x_angle_deg 1.7 x_mcbond_it 1.16 x_torsion_impr_deg 1.01 x_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7244 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling TRUNCATE data reduction SnB phasing SHARP phasing CNS refinement CCP4 data scaling TRUNCATE data scaling