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Crystal Structure of Penicillin-binding protein-related factor A from Bacillus Subtilis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEG 8000, Tris/HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.303 α = 90 b = 74.303 β = 90 c = 155.81 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-09-15 M SINGLE WAVELENGTH 2 1 100 CCD ADSC QUANTUM 4 2003-11-10
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 1.54000 NSLS X9B 2 SYNCHROTRON NSLS BEAMLINE X6A 1.28322 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.302 30 98.1 0.086 21.4 8.5 17965 17965 42.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.302 24.33 17959 17959 969 87.9 0.18897 0.18603 0.1937 0.24507 0.2477 RANDOM 37.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.167 r_dihedral_angle_1_deg 7.668 r_scbond_it 6.017 r_mcangle_it 5.005 r_mcbond_it 3.21 r_angle_refined_deg 2.186 r_angle_other_deg 1.053 r_symmetry_vdw_other 0.271 r_nbd_other 0.251 r_nbd_refined 0.225
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.167 r_dihedral_angle_1_deg 7.668 r_scbond_it 6.017 r_mcangle_it 5.005 r_mcbond_it 3.21 r_angle_refined_deg 2.186 r_angle_other_deg 1.053 r_symmetry_vdw_other 0.271 r_nbd_other 0.251 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.199 r_symmetry_vdw_refined 0.185 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.135 r_nbtor_other 0.092 r_bond_refined_d 0.028 r_gen_planes_refined 0.011 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2527 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building