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STRUCTURE OF GLYCINE OXIDASE WITH BOUND INHIBITOR GLYCOLATE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 291 10% w/v PEG 1000, 100 mM Imidazole, 200 mM Ca-Acetate, 30 mM Sodium-Glycolate, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.46 49.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.713 α = 90 b = 218.765 β = 90 c = 217.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.97934 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.92 159578 159578
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 96.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.8 19.92 159578 151571 8006 98.31 0.17881 0.17697 0.1893 0.21399 0.2226 RANDOM 25.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.174 r_dihedral_angle_1_deg 6.28 r_scbond_it 4.876 r_mcangle_it 3.122 r_mcbond_it 1.889 r_angle_refined_deg 1.32 r_angle_other_deg 0.831 r_symmetry_vdw_other 0.263 r_nbd_other 0.236 r_nbd_refined 0.191
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.174 r_dihedral_angle_1_deg 6.28 r_scbond_it 4.876 r_mcangle_it 3.122 r_mcbond_it 1.889 r_angle_refined_deg 1.32 r_angle_other_deg 0.831 r_symmetry_vdw_other 0.263 r_nbd_other 0.236 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.156 r_symmetry_vdw_refined 0.121 r_chiral_restr 0.081 r_nbtor_other 0.08 r_bond_refined_d 0.011 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11442 Nucleic Acid Atoms Solvent Atoms 1046 Heterogen Atoms 232
Software Software Software Name Purpose MAR345 data collection XDS data reduction SOLVE phasing REFMAC refinement XDS data scaling