X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MH1PDB ENTRY 1MH1

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3948.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.55α = 90
b = 78.67β = 90
c = 96.88γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7526.26140221

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MH11.7526.2638205201499.350.182780.182780.180810.21887RANDOM20.973
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.130.39-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.654
r_scangle_it4.294
r_scbond_it2.816
r_mcangle_it1.906
r_angle_refined_deg1.883
r_mcbond_it1.152
r_angle_other_deg0.967
r_symmetry_vdw_other0.335
r_nbd_other0.245
r_nbd_refined0.223
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.654
r_scangle_it4.294
r_scbond_it2.816
r_mcangle_it1.906
r_angle_refined_deg1.883
r_mcbond_it1.152
r_angle_other_deg0.967
r_symmetry_vdw_other0.335
r_nbd_other0.245
r_nbd_refined0.223
r_symmetry_vdw_refined0.222
r_xyhbond_nbd_refined0.18
r_symmetry_hbond_refined0.176
r_chiral_restr0.132
r_nbtor_other0.086
r_bond_refined_d0.021
r_gen_planes_refined0.009
r_metal_ion_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2561
Nucleic Acid Atoms
Solvent Atoms296
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling