☰ Navigation Tabs
Crystal Structure of the E. coli GDP-mannose mannosyl hydrolase in complex with GDP and MG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 20% PEG 4000, 0.2M Na (or Mg) Acetate, 0.1M Tris HCl pH8.5), VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.73 55.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.069 α = 90 b = 81.363 β = 90 c = 98.974 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 180 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH 2 1 IMAGE PLATE RIGAKU RAXIS IV
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.9791 NSLS X6A 2 ROTATING ANODE RIGAKU RU200 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 63.25 92.41 0.093 38.2 88143 88143
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.298 1.332 73.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.3 63.25 88143 4715 92.41 0.16994 0.16882 0.19059 RANDOM 11.643
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.23 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.737 r_scangle_it 3.016 r_scbond_it 1.967 r_angle_refined_deg 1.557 r_mcangle_it 1.416 r_angle_other_deg 0.847 r_mcbond_it 0.77 r_symmetry_vdw_other 0.367 r_nbd_other 0.261 r_nbd_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.737 r_scangle_it 3.016 r_scbond_it 1.967 r_angle_refined_deg 1.557 r_mcangle_it 1.416 r_angle_other_deg 0.847 r_mcbond_it 0.77 r_symmetry_vdw_other 0.367 r_nbd_other 0.261 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.146 r_symmetry_vdw_refined 0.145 r_chiral_restr 0.088 r_nbtor_other 0.081 r_gen_planes_other 0.016 r_gen_planes_refined 0.011 r_bond_refined_d 0.01 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 727 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing AMoRE phasing