☰ Navigation Tabs
Spa15, a Type III Secretion Chaperone from Shigella flexneri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.3 291 Ammonium Suplhate, ethylene glycol, Guanidium chloride, MES, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.18 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.878 α = 90 b = 87.682 β = 90.77 c = 58.703 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-06-23 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm 2002-09-26 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.9196 ESRF ID14-2 2 SYNCHROTRON ESRF BEAMLINE BM30A 0.9794, 0.9795, 0.9760 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.82 50 97.4 45246 45246
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.82 1.89 92.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.82 43.85 1 42717 2292 97.47 0.18272 0.18117 0.1922 0.21108 0.2159 RANDOM 24.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.352 r_scbond_it 5.602 r_mcangle_it 3.969 r_dihedral_angle_1_deg 3.024 r_mcbond_it 2.409 r_angle_refined_deg 1.235 r_angle_other_deg 0.696 r_nbd_other 0.228 r_symmetry_hbond_refined 0.218 r_symmetry_vdw_other 0.205
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.352 r_scbond_it 5.602 r_mcangle_it 3.969 r_dihedral_angle_1_deg 3.024 r_mcbond_it 2.409 r_angle_refined_deg 1.235 r_angle_other_deg 0.696 r_nbd_other 0.228 r_symmetry_hbond_refined 0.218 r_symmetry_vdw_other 0.205 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.19 r_symmetry_vdw_refined 0.15 r_chiral_restr 0.09 r_nbtor_other 0.088 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4244 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SnB phasing SOLVE phasing