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E. COLI uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH METHOD UNDER OIL 7.5 289 TRIS HCL, PEG4000, POTASSIUM ACETATE, 5-FLUOROURACIL, RIBOSE-1-PHOSPHATE, pH 7.50, BATCH METHOD UNDER OIL, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.1 40.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.188 α = 90 b = 191.701 β = 118.5 c = 91.909 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 115 IMAGE PLATE MARRESEARCH OSMIC 2002-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200H 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 16.93 92.7 0.109 6.2 6.5 105171 105171 34.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.47 84.9 0.419 1.8 6.7 13305
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.35 16.93 99877 5294 92.74 0.15267 0.14999 0.1606 0.2025 0.2078 RANDOM 19.214
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.05 -0.08 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.211 r_scangle_it 1.786 r_angle_refined_deg 1.214 r_scbond_it 1.015 r_angle_other_deg 0.819 r_mcangle_it 0.757 r_mcbond_it 0.406 r_nbd_other 0.231 r_symmetry_vdw_other 0.229 r_nbd_refined 0.191
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.211 r_scangle_it 1.786 r_angle_refined_deg 1.214 r_scbond_it 1.015 r_angle_other_deg 0.819 r_mcangle_it 0.757 r_mcbond_it 0.406 r_nbd_other 0.231 r_symmetry_vdw_other 0.229 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.163 r_metal_ion_refined 0.14 r_symmetry_hbond_refined 0.127 r_nbtor_other 0.082 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22320 Nucleic Acid Atoms Solvent Atoms 1149 Heterogen Atoms 212
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling