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Enhancing the activity of insulin at receptor edge: crystal structure and photo-cross-linking of A8 analogues
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TRZ PDB ENTRIES 1TRZ AND 1MPJ experimental model PDB 1MPJ PDB ENTRIES 1TRZ AND 1MPJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 298 Tris, sodium citrate, acetone, phenol, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 6.80
Crystal Properties Matthews coefficient Solvent content 1.8 31.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.341 α = 90 b = 79.341 β = 90 c = 34.708 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 1998-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.18 98.4 0.048 23.52 4.3 7426 16.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 95.4 0.224 9.2 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1TRZ AND 1MPJ 1.8 19.18 7523 7426 796 98.4 0.189 0.189 0.245 RANDOM 24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.61 -0.29 -1.61 3.23
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.3 c_scangle_it 3.13 c_mcangle_it 2.3 c_scbond_it 2.12 c_mcbond_it 1.45 c_angle_deg 1.2 c_improper_angle_d 0.64 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.3 c_scangle_it 3.13 c_mcangle_it 2.3 c_scbond_it 2.12 c_mcbond_it 1.45 c_angle_deg 1.2 c_improper_angle_d 0.64 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 816 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS refinement CNS phasing