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Complex of LMO4 LIM domains 1 and 2 with the ldb1 LID domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 298 1.0M ammonium sulfate, 0.1M MES, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 50.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.344 α = 90 b = 61.344 β = 90 c = 93.159 γ = 120
Symmetry Space Group P 3 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2003-01-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.08, 1.282, 1.170, 1.283 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 91.3 0.04 18 2.6 45526 45441 -3 16.442
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 79.2 0.291 2.4 2 3907
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 46.13 45437 43146 2291 95 0.1568 0.15686 0.15499 0.1638 0.19316 0.1893 RANDOM 19.986
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 10.447 r_sphericity_bonded 8.019 r_scangle_it 6.55 r_dihedral_angle_1_deg 6.234 r_scbond_it 5.181 r_mcangle_it 4.959 r_mcbond_it 3.824 r_rigid_bond_restr 1.382 r_angle_refined_deg 1.242 r_angle_other_deg 0.78
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 10.447 r_sphericity_bonded 8.019 r_scangle_it 6.55 r_dihedral_angle_1_deg 6.234 r_scbond_it 5.181 r_mcangle_it 4.959 r_mcbond_it 3.824 r_rigid_bond_restr 1.382 r_angle_refined_deg 1.242 r_angle_other_deg 0.78 r_symmetry_vdw_other 0.272 r_nbd_other 0.25 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.101 r_chiral_restr 0.082 r_nbtor_other 0.08 r_symmetry_hbond_refined 0.07 r_metal_ion_refined 0.029 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1250 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing