1RU5

Solution structure of porcine peptide YY (pPYY)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY2mM pPYY, pH=4.290% H2O/10% D2O4.2ambient301
2DQF-COSY2mM pPYY, pH=4.290% H2O/10% D2O4.2ambient301
32D TOCSY2mM pPYY, pH=4.290% H2O/10% D2O4.2ambient301
42D NOESY2mM pPYY, pH=4.299% D2O4.2ambient301
5DQF-COSY2mM pPYY, pH=4.299% D2O4.2ambient301
615N{1H}-NOE1mM U-15N-pPYY, pH=4.290% H2O/10% D2O4.2ambient301
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerDRX600
3BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
calculation of structure by torsion angle dynamics refinement by energy minimization with full forcefield in explicit waterXwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
Detailsbackbone dynamics information was used to verify structures. Structure deviates from previously published structure by Keire et al., pdb entry 1qbf
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.0Bruker
2data analysisXEASY2.51Bartels et al.
3refinementAMBER66Kollman et al.
4structure solutionDYANA1.5Guentert et al.