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X-ray Structure of Cyanide Derivative of Truncated Hemoglobin N (trHbN) from Mycobacterium Tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 ammonium sulfate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.567 α = 90 b = 61.443 β = 90 c = 91.294 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.5 0.137 11 4 17605 17605
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 98.6 0.236 4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 51.3 16560 16560 879 99.34 0.18238 0.18238 0.17947 0.1922 0.23709 0.2479 RANDOM 20.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 0.08 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.16 r_angle_other_deg 3.699 r_scangle_it 2.956 r_scbond_it 1.847 r_angle_refined_deg 1.331 r_mcangle_it 1.215 r_mcbond_it 0.67 r_metal_ion_refined 0.588 r_nbd_refined 0.396 r_symmetry_vdw_other 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.16 r_angle_other_deg 3.699 r_scangle_it 2.956 r_scbond_it 1.847 r_angle_refined_deg 1.331 r_mcangle_it 1.215 r_mcbond_it 0.67 r_metal_ion_refined 0.588 r_nbd_refined 0.396 r_symmetry_vdw_other 0.35 r_symmetry_hbond_refined 0.312 r_nbd_other 0.307 r_symmetry_vdw_refined 0.264 r_xyhbond_nbd_refined 0.223 r_nbtor_other 0.104 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1990 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing