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Active Conformation of Farnesyl Pyrophosphate Synthase Bound to Isopentyl Pyrophosphate and Dimethylallyl S-Thiolodiphosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Nanoliter Sitting Drop Vapour Diffusion 6 298 MPEG 2000, HEPES, pH 6, Nanoliter Sitting Drop Vapour Diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.67 53.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.839 α = 90 b = 88.839 β = 90 c = 174.769 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 97 CCD ADSC QUANTUM 4 mirrors 2002-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.00 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 50 96.1 0.1 15.9 7.3 27547 26473 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.42 2.51 93.2 0.44 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.42 43.03 1 26469 25126 1343 100 0.20604 0.20318 0.25928 RANDOM 21.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.253 r_scangle_it 2.355 r_angle_refined_deg 1.742 r_scbond_it 1.34 r_angle_other_deg 0.809 r_mcangle_it 0.794 r_mcbond_it 0.405 r_symmetry_hbond_refined 0.394 r_symmetry_vdw_other 0.276 r_nbd_other 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.253 r_scangle_it 2.355 r_angle_refined_deg 1.742 r_scbond_it 1.34 r_angle_other_deg 0.809 r_mcangle_it 0.794 r_mcbond_it 0.405 r_symmetry_hbond_refined 0.394 r_symmetry_vdw_other 0.276 r_nbd_other 0.223 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.188 r_symmetry_vdw_refined 0.151 r_chiral_restr 0.116 r_nbtor_other 0.086 r_metal_ion_refined 0.064 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4544 Nucleic Acid Atoms Solvent Atoms 237 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing