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CRYSTAL STRUCTURE OF D-ALLOSE BINDING PROTEIN FROM ESCHERICHIA COLI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2DRI PDB ENTRY 2DRI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.98 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.38 α = 90 b = 67.82 β = 96.71 c = 53.59 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.787 96.5 0.045 10.4 2.8 21163 17.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.85 93.6 0.15 5 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2DRI 1.8 29 22055 22055 1295 96.5 0.194 0.1764 0.245 0.2302 RANDOM 11.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.6 p_staggered_tor 15.8 p_planar_tor 4.2 p_multtor_nbd 0.252 p_singtor_nbd 0.173 p_xyhbond_nbd 0.162 p_planar_d 0.03 p_angle_d 0.026 p_plane_restr 0.024 p_bond_d 0.01
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.6 p_staggered_tor 15.8 p_planar_tor 4.2 p_multtor_nbd 0.252 p_singtor_nbd 0.173 p_xyhbond_nbd 0.162 p_planar_d 0.03 p_angle_d 0.026 p_plane_restr 0.024 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2133 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 18
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction CCP4 data scaling