1RNA

CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5308pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 308.00K
Crystal Properties
Matthews coefficientSolvent content
2.1242.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.11α = 90
b = 44.61β = 90
c = 49.11γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray291DIFFRACTOMETERENRAF-NONIUS CAD4
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2525492424922

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.2510224370.131
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_bond_it5.02
n_phos_angle_it4.55
n_sugar_angle_it4.3
n_sugar_bond_it3.49
n_multtor_nbd0.168
n_singtor_nbd0.139
n_chiral_restr0.077
n_angle_d0.035
n_plane_restr0.017
n_bond_d0.004
RMS Deviations
KeyRefinement Restraint Deviation
n_phos_bond_it5.02
n_phos_angle_it4.55
n_sugar_angle_it4.3
n_sugar_bond_it3.49
n_multtor_nbd0.168
n_singtor_nbd0.139
n_chiral_restr0.077
n_angle_d0.035
n_plane_restr0.017
n_bond_d0.004
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_sugar_bond_d
n_sugar_bond_angle_d
n_phos_bond_d
n_phos_bond_angle_d
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms582
Solvent Atoms91
Heterogen Atoms

Software

Software
Software NamePurpose
NUCLSQrefinement