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A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D TOCSY 2.4mM DNA Duplex, 90% H2O, 10% D2O 90% H2O/10% D2O 100mM NaCl 7.0 1 atm 298 2 2D NOESY 2.4mM DNA Duplex, 90% H2O, 10% D2O 90% H2O/10% D2O 100mM NaCl 7.0 1 atm 298 3 DQF-COSY 2.4mM DNA Duplex, 90% H2O, 10% D2O 90% H2O/10% D2O 100mM NaCl 7.0 1 atm 298 4 2D ROESY 2.4mM DNA Duplex, 90% H2O, 10% D2O 90% H2O/10% D2O 100mM NaCl 7.0 1 atm 298 5 P-H COSY 2.4mM DNA Duplex, 90% H2O, 10% D2O 90% H2O/10% D2O 100mM NaCl 7.0 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600 3 Bruker AVANCE 600 4 Bruker AMX 400
NMR Refinement Method Details Software Restrained Molecular Dynamics 514 NOE restraints defined for the decamer duplex SYBYL
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 refinement SYBYL 6.3 TRIPOS INC. 2 iterative matrix relaxation MARDIGRAS 1.0 TRIPOS INC. 3 collection XwinNMR 3.0 Bruker 4 collection VNMR 6 Varian 5 data analysis Sparky 3 Goddard & Kneller