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E. COLI RIBOKINASE IN COMPLEX WITH D-RIBOSE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 5 MM RIBOSE, 10 MM MGCL2 IN THE DROP, 0.1 M TRIS-HCL BUFFER, PH 8.4 WITH
2.1-2.4 M NH4H2PO4 AS PRECIPITANT, VAPOR DIFFUSION, HANGING DROP
CRYO-SOLUTION: MOTHER LIQUOR CONTAINING 20% GLYCEROL.
SOAK-TIME: 2-3 MINUTES.
Crystal Properties Matthews coefficient Solvent content 3.1 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.21 α = 90 b = 95.21 β = 90 c = 154.46 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS II MSC MIRRORS 1997-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29 99.9 0.069 30.2 10.5 16814 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 99.8 0.354 5.8 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.4 15 16740 1668 99.9 0.231 0.229 0.2198 0.288 0.2321 RANDOM 45.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 31.2 p_staggered_tor 14 p_scangle_it 3.982 p_planar_tor 3.9 p_scbond_it 2.876 p_mcangle_it 1.342 p_mcbond_it 0.753 p_multtor_nbd 0.26 p_singtor_nbd 0.188 p_xyhbond_nbd 0.167
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 31.2 p_staggered_tor 14 p_scangle_it 3.982 p_planar_tor 3.9 p_scbond_it 2.876 p_mcangle_it 1.342 p_mcbond_it 0.753 p_multtor_nbd 0.26 p_singtor_nbd 0.188 p_xyhbond_nbd 0.167 p_chiral_restr 0.113 p_planar_d 0.036 p_angle_d 0.032 p_plane_restr 0.021 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2236 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling