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Crystal Structure of a Soluble Dimeric Form of Oxidised CLIC1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K0M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 PEG MME 5000, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.17 49.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.861 α = 90 b = 69.189 β = 90 c = 107.506 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAC Science DIP-2030 mirrors 2001-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 57.74 95.6 0.058 0.058 18.53 6.3 40766 38677 1 19.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1K0M 1.792 57.74 38677 38677 2089 95.56 0.17765 0.17765 0.17571 0.1874 0.21324 0.2219 RANDOM 18.997
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.22 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.527 r_scangle_it 5.052 r_scbond_it 3.06 r_mcangle_it 2.046 r_angle_refined_deg 1.689 r_mcbond_it 1.14 r_angle_other_deg 0.885 r_symmetry_vdw_other 0.267 r_symmetry_vdw_refined 0.253 r_nbd_other 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.527 r_scangle_it 5.052 r_scbond_it 3.06 r_mcangle_it 2.046 r_angle_refined_deg 1.689 r_mcbond_it 1.14 r_angle_other_deg 0.885 r_symmetry_vdw_other 0.267 r_symmetry_vdw_refined 0.253 r_nbd_other 0.24 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.17 r_chiral_restr 0.096 r_nbtor_other 0.086 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_gen_planes_other 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3319 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling