X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherAGAO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293DROP: 0.0015ml of protein solution (11.7mg/ml, 50mM HEPES pH 7.0) plus 0.0015ml of reservoir solution (1.0-1.5M NH4SO4, 2mM CUSO4, 150mM sodium citrate pH 6.0-7.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.0959.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 158.009α = 90
b = 63.189β = 112.09
c = 92.149γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHosmic mirros2003-05-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6726.397.10.0513.939449722.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.671.7393.60.2883.542.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTAGAO1.6726.389771472697.180.158430.157390.17804RANDOM19.167
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.40.52.23-0.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.136
r_scangle_it3.218
r_mcangle_it2.462
r_scbond_it2.038
r_mcbond_it1.564
r_angle_refined_deg1.139
r_angle_other_deg0.752
r_symmetry_vdw_other0.303
r_nbd_other0.242
r_nbd_refined0.192
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.136
r_scangle_it3.218
r_mcangle_it2.462
r_scbond_it2.038
r_mcbond_it1.564
r_angle_refined_deg1.139
r_angle_other_deg0.752
r_symmetry_vdw_other0.303
r_nbd_other0.242
r_nbd_refined0.192
r_symmetry_hbond_refined0.165
r_symmetry_vdw_refined0.131
r_xyhbond_nbd_refined0.114
r_nbtor_other0.08
r_chiral_restr0.071
r_metal_ion_refined0.051
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4868
Nucleic Acid Atoms
Solvent Atoms543
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling