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Crystal Structure of Resistin-like beta
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RGX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 2.5M NaCl, 0.1M Bis-Tris pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.61 65.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.604 α = 90 b = 86.016 β = 90 c = 283.406 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2002-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 1.06975 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 15 100 0.145 20 14.2 13231 13231 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.21 100 0.325 9.5 1304
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1RGX 3.106 14.96 12406 12406 671 99.95 0.20431 0.20431 0.20117 0.2078 0.2638 0.2693 RANDOM 28.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.313 r_dihedral_angle_3_deg 19.03 r_dihedral_angle_4_deg 15.532 r_dihedral_angle_1_deg 8.306 r_angle_refined_deg 1.557 r_scangle_it 1.284 r_mcangle_it 1.135 r_angle_other_deg 0.826 r_scbond_it 0.76 r_mcbond_it 0.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.313 r_dihedral_angle_3_deg 19.03 r_dihedral_angle_4_deg 15.532 r_dihedral_angle_1_deg 8.306 r_angle_refined_deg 1.557 r_scangle_it 1.284 r_mcangle_it 1.135 r_angle_other_deg 0.826 r_scbond_it 0.76 r_mcbond_it 0.618 r_symmetry_vdw_refined 0.356 r_symmetry_hbond_refined 0.257 r_nbd_other 0.23 r_nbd_refined 0.228 r_symmetry_vdw_other 0.22 r_xyhbond_nbd_refined 0.16 r_nbtor_other 0.096 r_chiral_restr 0.078 r_mcbond_other 0.039 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3303 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement