☰ Navigation Tabs
Structure of the photosynthetic reaction centre from Rhodobacter sphaeroides carotenoidless strain R-26.1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 289 Trisodium citrate, LDAO, 1,2,3-heptanetriol, Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 16.0K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.033 α = 90 b = 144.033 β = 90 c = 190.072 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 4 mirrors 2002-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.87 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 23.34 99.1 0.074 11 4.7 78686 78686 57.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 99 0.864 2.2 4.8 3889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 23.34 78682 74764 3918 99.12 0.15672 0.15672 0.15541 0.1594 0.18188 0.1858 RANDOM 52.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.44 0.87 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.024 r_dihedral_angle_4_deg 19.303 r_dihedral_angle_3_deg 16.258 r_dihedral_angle_1_deg 5.699 r_scangle_it 2.51 r_scbond_it 1.714 r_angle_refined_deg 1.686 r_angle_other_deg 1.322 r_mcangle_it 1.107 r_mcbond_it 0.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.024 r_dihedral_angle_4_deg 19.303 r_dihedral_angle_3_deg 16.258 r_dihedral_angle_1_deg 5.699 r_scangle_it 2.51 r_scbond_it 1.714 r_angle_refined_deg 1.686 r_angle_other_deg 1.322 r_mcangle_it 1.107 r_mcbond_it 0.907 r_symmetry_vdw_other 0.295 r_nbd_refined 0.2 r_nbd_other 0.172 r_mcbond_other 0.146 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.106 r_nbtor_other 0.09 r_symmetry_vdw_refined 0.078 r_symmetry_hbond_refined 0.054 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6474 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 688
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing