☰ Navigation Tabs
Monoclinic crystal form of the truncated K122-4 pilin from Pseudomonas aeruginosa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QVE PDB Entry 1QVE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 295 PEG 4000, Potassium Phosphate Monobasic, Sodium Cacodylate, Tris HCl, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 41.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.301 α = 90 b = 80.72 β = 113.37 c = 39.127 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 40.49 78.5 0.195 9.3 2.8 25475 22.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.63 68 0.01068 0.6 1.7 2771
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1QVE 1.8 40.49 16158 15497 661 83.2 0.23661 0.23661 0.23583 0.2371 0.25428 0.253 RANDOM 12.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 0.01 1.23 -0.13
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 11.01 r_scbond_it 8.497 r_mcangle_it 7.935 r_mcbond_it 5.925 r_dihedral_angle_1_deg 4.963 r_angle_other_deg 3.918 r_angle_refined_deg 2.169 r_symmetry_vdw_other 0.317 r_nbd_other 0.302 r_nbd_refined 0.25
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 11.01 r_scbond_it 8.497 r_mcangle_it 7.935 r_mcbond_it 5.925 r_dihedral_angle_1_deg 4.963 r_angle_other_deg 3.918 r_angle_refined_deg 2.169 r_symmetry_vdw_other 0.317 r_nbd_other 0.302 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.194 r_symmetry_hbond_refined 0.153 r_nbtor_other 0.122 r_symmetry_vdw_refined 0.113 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_gen_planes_other 0.002 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1790 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing