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Yeast cytosine deaminase crystal form p212121 with sodium acetate.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OX7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Streak seeding, hanging drop 6.5 277 PEG 8000, sodium acetate, cacodylate, pH 6.5, Streak seeding, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.2 44.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.489 α = 90 b = 72.125 β = 90 c = 79.441 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 98.2 0.059 34.4 5.8 18853 18523 14.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.2 92.1 0.22 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OX7 2.1 19.87 17910 17910 871 95 0.185 0.185 0.185 0.1845 0.211 0.2114 RANDOM 30.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.4 -11.05 19.45
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21 c_scangle_it 2.84 c_scbond_it 1.97 c_mcangle_it 1.78 c_mcbond_it 1.2 c_angle_deg 1.1 c_improper_angle_d 0.69 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2366 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 4
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing