☰ Navigation Tabs
The crystal structure of Mycobacterium tuberculosis MPT51 (FbpC1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DQZ pdb entry 1dqz
Crystallization Crystal Properties Matthews coefficient Solvent content 3.04 59.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.9 α = 90 b = 108.9 β = 90 c = 109.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.933 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 99.7 0.077 22 6.2 78268 78268 18.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 99.9 0.489 3 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1dqz 1.71 30 69287 69287 3668 93.3 0.18954 0.1887 0.20533 RANDOM 12.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.12 -1.31 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.347 r_angle_refined_deg 0.955 r_scangle_it 0.919 r_angle_other_deg 0.753 r_scbond_it 0.61 r_mcangle_it 0.329 r_symmetry_vdw_refined 0.291 r_nbd_other 0.222 r_symmetry_hbond_refined 0.193 r_symmetry_vdw_other 0.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.347 r_angle_refined_deg 0.955 r_scangle_it 0.919 r_angle_other_deg 0.753 r_scbond_it 0.61 r_mcangle_it 0.329 r_symmetry_vdw_refined 0.291 r_nbd_other 0.222 r_symmetry_hbond_refined 0.193 r_symmetry_vdw_other 0.185 r_nbd_refined 0.182 r_mcbond_it 0.173 r_xyhbond_nbd_refined 0.117 r_nbtor_other 0.08 r_chiral_restr 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3936 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing