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crystal structure analysis of sup35 complexed with GMPPNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R5B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 HEPES, Ethylene Glycol, PEG 8000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.09 59.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.524 α = 90 b = 82.524 β = 90 c = 168.076 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9724 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 20 98.3 0.14 0.14 5.2 11985 11894
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.11 98.3 0.14 0.14 0.7 7.3 1134
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1R5B 3.2 20 9417 452 97.7 0.26836 0.26597 0.2447 0.31959 0.3025 RANDOM 48.353
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.33 1.33 -2.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.647 r_scangle_it 2.554 r_mcangle_it 2.001 r_scbond_it 1.411 r_angle_refined_deg 1.377 r_mcbond_it 1.08 r_angle_other_deg 0.831 r_symmetry_vdw_other 0.267 r_nbd_other 0.246 r_nbd_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.647 r_scangle_it 2.554 r_mcangle_it 2.001 r_scbond_it 1.411 r_angle_refined_deg 1.377 r_mcbond_it 1.08 r_angle_other_deg 0.831 r_symmetry_vdw_other 0.267 r_nbd_other 0.246 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.219 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.184 r_nbtor_other 0.085 r_chiral_restr 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3222 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling CNS phasing