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ADP-ribosyltransferase C3bot2 from Clostridium botulinum, triclinic form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G24 1G24-A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.2 M Lithium Sulfate, 7% PEG 4000, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47 α = 98.5 b = 47 β = 97.3 c = 108.7 γ = 96.5
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirror 1997-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 1.1 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 20 94 0.034 25.6 2.1 118341 118341 -3 14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.6 90 0.068 12.4 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1G24-A 1.57 15 114713 114713 3554 100 0.172 0.172 0.171 0.1737 0.205 RANDOM 18.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.07 0.16 0.04 0.05 -0.15
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.558 r_scbond_it 6.01 r_dihedral_angle_1_deg 5.311 r_mcangle_it 3.744 r_mcbond_it 2.249 r_angle_refined_deg 1.416 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.126 r_symmetry_hbond_refined 0.121
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.558 r_scbond_it 6.01 r_dihedral_angle_1_deg 5.311 r_mcangle_it 3.744 r_mcbond_it 2.249 r_angle_refined_deg 1.416 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.126 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.095 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6436 Nucleic Acid Atoms Solvent Atoms 907 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing