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CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HTI PDB ENTRY 1HTI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 PEG 4000, MgCl2, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.05 40.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.159 α = 90 b = 72.035 β = 90 c = 93.252 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 85 IMAGE PLATE MARRESEARCH Mirror 1999-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.31 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 15.65 97.5 0.104 10.16 2.93 21372 20842 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.29 99.7 0.379 2.63 2.83 1044
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HTI 2.25 15.54 19784 1032 97.53 0.18409 0.18409 0.18218 0.1782 0.21999 0.2189 RANDOM 20.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 -0.78 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.684 r_scangle_it 2.731 r_scbond_it 1.613 r_angle_refined_deg 1.309 r_mcangle_it 1.071 r_mcbond_it 0.568 r_symmetry_hbond_refined 0.267 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.684 r_scangle_it 2.731 r_scbond_it 1.613 r_angle_refined_deg 1.309 r_mcangle_it 1.071 r_mcbond_it 0.568 r_symmetry_hbond_refined 0.267 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3731 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing