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CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HTI PDB ENTRY 1HTI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 PEG 4000, MgCl2, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.4 48.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.229 α = 90 b = 80.289 β = 90 c = 174.283 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MARRESEARCH Mirror 1998-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.37 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 13.5 80.9 0.124 6.11 1.93 20988 20064 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.92 58.3 0.176 2.55 1.31 1617
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HTI 2.85 13.5 18929 1026 81.63 0.17399 0.17399 0.17196 0.1667 0.21194 0.2058 RANDOM 21.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.69 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.514 r_scangle_it 2.723 r_scbond_it 1.488 r_angle_refined_deg 1.358 r_mcangle_it 1.091 r_symmetry_hbond_refined 0.705 r_symmetry_vdw_refined 0.555 r_mcbond_it 0.554 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.514 r_scangle_it 2.723 r_scbond_it 1.488 r_angle_refined_deg 1.358 r_mcangle_it 1.091 r_symmetry_hbond_refined 0.705 r_symmetry_vdw_refined 0.555 r_mcbond_it 0.554 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7469 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing