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CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other A partially refined dimer of rabbit muscle TIM structure (crystal form B)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 PEG 4000, MgCl2, DMSO, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.2 44.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.55 α = 90 b = 75.952 β = 90 c = 166.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal Zerodur mirror 2001-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.9330 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 33 88.7 0.066 18.34 3.81 152459 135276 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.52 65.8 0.327 2.25 2.06 6005
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT A partially refined dimer of rabbit muscle TIM structure (crystal form B) 1.5 32.79 127887 6747 89.1 0.16091 0.16091 0.15942 0.1627 0.18954 0.1926 RANDOM 11.459
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.44 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.844 r_scangle_it 3.426 r_scbond_it 2.074 r_angle_refined_deg 1.393 r_mcangle_it 1.341 r_angle_other_deg 0.834 r_mcbond_it 0.764 r_symmetry_vdw_other 0.264 r_nbd_other 0.255 r_symmetry_vdw_refined 0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.844 r_scangle_it 3.426 r_scbond_it 2.074 r_angle_refined_deg 1.393 r_mcangle_it 1.341 r_angle_other_deg 0.834 r_mcbond_it 0.764 r_symmetry_vdw_other 0.264 r_nbd_other 0.255 r_symmetry_vdw_refined 0.248 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.208 r_xyhbond_nbd_refined 0.174 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7469 Nucleic Acid Atoms Solvent Atoms 1151 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing