☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THE HEPATOCYTE GROWTH FACTOR RECEPTOR C-MET
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R0P pdb entry 1r0p
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 PEG 5000 MME, isopropanol, Hepes, pH 7.10, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.038 α = 90 b = 46.028 β = 90 c = 158.448 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 95.7 0.084 19.6 5.9 28705
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 90.4 0.315 4.5 2644
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1r0p 1.8 30 28705 27250 1405 95.58 0.17447 0.17447 0.17297 0.20381 RANDOM 18.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.514 r_scangle_it 3.238 r_scbond_it 1.959 r_angle_refined_deg 1.29 r_mcangle_it 1.272 r_angle_other_deg 0.805 r_mcbond_it 0.671 r_symmetry_vdw_other 0.298 r_nbd_refined 0.244 r_symmetry_vdw_refined 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.514 r_scangle_it 3.238 r_scbond_it 1.959 r_angle_refined_deg 1.29 r_mcangle_it 1.272 r_angle_other_deg 0.805 r_mcbond_it 0.671 r_symmetry_vdw_other 0.298 r_nbd_refined 0.244 r_symmetry_vdw_refined 0.238 r_nbd_other 0.237 r_symmetry_hbond_refined 0.222 r_xyhbond_nbd_refined 0.126 r_nbtor_other 0.082 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2286 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms
Software Software Software Name Purpose ProDC data collection SCALEPACK data scaling EPMR phasing REFMAC refinement