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Phosphotransacetylase from Methanosarcina thermophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 294 sodium acetate, ammonium sulfate, DTT, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.05 59.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.345 α = 90 b = 115.345 β = 90 c = 129.366 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.1 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 96.8 0.084 0.084 49910 49910
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 97.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 20 42640 2225 96.75 0.24864 0.24667 0.2249 0.28636 0.221 RANDOM 43.046
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.07 2.07 -4.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.859 r_scangle_it 3.392 r_scbond_it 1.97 r_mcangle_it 1.64 r_angle_refined_deg 1.549 r_angle_other_deg 0.902 r_mcbond_it 0.862 r_symmetry_hbond_refined 0.278 r_symmetry_vdw_refined 0.266 r_symmetry_vdw_other 0.263
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.859 r_scangle_it 3.392 r_scbond_it 1.97 r_mcangle_it 1.64 r_angle_refined_deg 1.549 r_angle_other_deg 0.902 r_mcbond_it 0.862 r_symmetry_hbond_refined 0.278 r_symmetry_vdw_refined 0.266 r_symmetry_vdw_other 0.263 r_nbd_other 0.245 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.1 r_nbtor_other 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9832 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing