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Structure of rabbit actin in complex with kabiramide C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 5.5 293 Crystals of the actin-kabiramide C complex were grown by small-scale batch by mixing equal volumes of the complex and 100 mM MES, 18% (w/v) polyethylene glycol 1500, 12% (w/v) 1,6-hexanediol, 100 mM CaCl2, 1 mM sodium azide, 1 mM TCEP, pH 5.5, Batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.919 α = 90 b = 70.617 β = 90 c = 75.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 54 98.5 0.044 47.1 8.3 65708 65708 11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 10 0.123 13.9 6310
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 30 61542 60570 5129 98.42 0.17001 0.16855 0.1775 0.18691 0.1985 RANDOM 16.301
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 -0.23 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.585 r_scangle_it 3.782 r_scbond_it 2.45 r_mcangle_it 1.69 r_angle_refined_deg 1.669 r_angle_other_deg 1.6 r_mcbond_it 0.926 r_symmetry_hbond_refined 0.482 r_symmetry_vdw_other 0.248 r_nbd_other 0.241
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.585 r_scangle_it 3.782 r_scbond_it 2.45 r_mcangle_it 1.69 r_angle_refined_deg 1.669 r_angle_other_deg 1.6 r_mcbond_it 0.926 r_symmetry_hbond_refined 0.482 r_symmetry_vdw_other 0.248 r_nbd_other 0.241 r_xyhbond_nbd_refined 0.217 r_nbd_refined 0.215 r_chiral_restr 0.201 r_symmetry_vdw_refined 0.147 r_nbtor_other 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2843 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing