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Crystal structure of a five-residue deletion mutant of the Rop protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RPO PDB ENTRY 1RPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 NaCl, methanol, Bis-Tris, DTT, EDTA, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.38 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.476 α = 90 b = 42.565 β = 104.68 c = 51.722 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR MARRESEARCH mirrors 1997-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 33 95.32 0.066 0.066 7.8 3.8 7271 7271 55
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.09 76 0.312 0.312 2.2 2.6 555
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1RPO 2.02 33 7270 6909 361 95.34 0.19057 0.19057 0.18946 0.21218 0.2688 RANDOM 50.113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.46 -0.75 0.51 1.58
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 11.352 r_scbond_it 7.702 r_mcangle_it 5.495 r_dihedral_angle_1_deg 4.814 r_mcbond_it 2.884 r_angle_refined_deg 1.394 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.127
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 11.352 r_scbond_it 7.702 r_mcangle_it 5.495 r_dihedral_angle_1_deg 4.814 r_mcbond_it 2.884 r_angle_refined_deg 1.394 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 789 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building REFMAC refinement X-PLOR phasing