☰ Navigation Tabs
Crystal structure of Methanococcus jannaschii phosphosulfolactate synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 298 1.6 M Ammonium sulfate, 100 mM succinate, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.2 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.789 α = 90 b = 93.789 β = 90 c = 93.789 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9792 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 90 88.5 0.28 28.4 29827 29827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 56.8 0.201 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 65.94 26642 25348 1294 81.8 0.17381 0.17279 0.1844 0.19269 0.2037 RANDOM 18.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.986 r_scangle_it 3.488 r_scbond_it 2.102 r_angle_other_deg 1.462 r_angle_refined_deg 1.293 r_mcangle_it 1.261 r_mcbond_it 0.665 r_symmetry_vdw_other 0.301 r_symmetry_vdw_refined 0.274 r_nbd_other 0.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.986 r_scangle_it 3.488 r_scbond_it 2.102 r_angle_other_deg 1.462 r_angle_refined_deg 1.293 r_mcangle_it 1.261 r_mcbond_it 0.665 r_symmetry_vdw_other 0.301 r_symmetry_vdw_refined 0.274 r_nbd_other 0.239 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.107 r_nbtor_other 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1977 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing