1QVX

SOLUTION STRUCTURE OF THE FAT DOMAIN OF FOCAL ADHESION KINASE

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D simultaneous 13C/15N edited NOESY	0.6mM 13C,15N labeled FAT with 4.8mM LD2 peptide, 25mM TRIS-MALEATE, 0.1% NAN3, 1.0uM PPACK, 0.5mg/mL PEFABLOC, 90% H2O, 10% D2O	20mM deuterated Tris-maleate, 50mM NaCl, 0.1mM EDTA, 0.1% NaN3, and 10% D2O, pH 6.0	50 mM NaCl	6.0	1 atm	310
2	3D CBCA(CO)NH	0.6mM 13C,15N labeled FAT with 4.8mM LD2 peptide, 25mM TRIS-MALEATE, 0.1% NAN3, 1.0uM PPACK, 0.5mg/mL PEFABLOC, 90% H2O, 10% D2O	20mM deuterated Tris-maleate, 50mM NaCl, 0.1mM EDTA, 0.1% NaN3, and 10% D2O, pH 6.0	50 mM NaCl	6.0	1 atm	310
3	3D HNCA	0.6mM 13C,15N labeled FAT with 4.8mM LD2 peptide, 25mM TRIS-MALEATE, 0.1% NAN3, 1.0uM PPACK, 0.5mg/mL PEFABLOC, 90% H2O, 10% D2O	20mM deuterated Tris-maleate, 50mM NaCl, 0.1mM EDTA, 0.1% NaN3, and 10% D2O, pH 6.0	50 mM NaCl	6.0	1 atm	310
4	3D HNCACB	0.6mM 13C,15N labeled FAT with 4.8mM LD2 peptide, 25mM TRIS-MALEATE, 0.1% NAN3, 1.0uM PPACK, 0.5mg/mL PEFABLOC, 90% H2O, 10% D2O	20mM deuterated Tris-maleate, 50mM NaCl, 0.1mM EDTA, 0.1% NaN3, and 10% D2O, pH 6.0	50 mM NaCl	6.0	1 atm	310
5	3D H(CCO)-TOCSY-NNH	0.6mM 13C,15N labeled FAT with 4.8mM LD2 peptide, 25mM TRIS-MALEATE, 0.1% NAN3, 1.0uM PPACK, 0.5mg/mL PEFABLOC, 90% H2O, 10% D2O	20mM deuterated Tris-maleate, 50mM NaCl, 0.1mM EDTA, 0.1% NaN3, and 10% D2O, pH 6.0	50 mM NaCl	6.0	1 atm	310
6	3D (H)C(CO)-TOCSY-NNH	0.6mM 13C,15N labeled FAT with 4.8mM LD2 peptide, 25mM TRIS-MALEATE, 0.1% NAN3, 1.0uM PPACK, 0.5mg/mL PEFABLOC, 90% H2O, 10% D2O	20mM deuterated Tris-maleate, 50mM NaCl, 0.1mM EDTA, 0.1% NaN3, and 10% D2O, pH 6.0	50 mM NaCl	6.0	1 atm	310

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	800
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
The program CNS version 1.1 with ARIA version 1.2 module was used to calculate the structures of the avian FAT domain.	The structural restraints included NOE, hydrogen bond, dihedral angle, and RDC restraints. The NOE distance restraints were derived from a 3D simultaneous 13C/15N edited NOESY peak lists with 75 ms mixing time. The peak lists were generated automatically by NMRView and edited manually to remove any obvious water and apodization artifacts. The peak lists were unassigned and uncalibrated with respect to distance. To calibrate the NOE distances, the rotational correlation time of the complex was set to 10 ns and was based on values obtained on proteins of this size at similar temperature. The default parameters for ARIA produced structures with poor convergence. Several parameters were optimized, including the ambiguous cutoff (rho), the violation tolerance (vtol), and maximum number of ambiguities per peak (maxn), to provide better noise discrimination. The following scheme led to the best convergence over 9 iterations: rho = (0.95, 0.95, 0.95, 0.94, 0.93, 0.92, 0.91, 0.90, 0 80), vtol = (5.0, 2.0, 1.0, 0.5, 0.25, 1.0, 0.1, 0.1, 0.1), maxn = 5 for all iterations. An ensemble of 25 calculated NMR structures of the avian FAT domain was selected for further analysis.	CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	25
Representative Model	1 (closest to the average)

Additional NMR Experimental Information
Details	Aromatic sidechain assignments were obtained from 2D (HB)CB(CGCDCE)HE and 2D (HB)CB(CGCD)HD experiments. 1H-15N residual dipolar coupling values were measured using 7.5 mg/ml Pf1 phage as aligning medium

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.1	Brunger, A.T. et al.
2	processing	NMRPipe	2.1	Delaglio, F. et al.
3	collection	VNMR	6.1	Varian
4	refinement	ARIA	1.2	Linge, J.P. et al.
5	data analysis	NMRView	5.0.4	Johnson, B.A. et al.