X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2ALDPDB ENTRY 2ALD

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7HANGING DROP WITH AMMONIUM SULFATE AS THE PRECIPITANT, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
5.6579

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 291.1α = 90
b = 489.84β = 103.68
c = 103.36γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDADSC QUANTUM 4 CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.5SRSPX9.5

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.535710.1540.1223.22.433961242.57
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.6455.80.5670.4380.42.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ALD2.52931614616667710.2240.276RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor35.4
p_staggered_tor22.3
p_scangle_it13.14
p_scbond_it12.234
p_mcangle_it7.652
p_mcbond_it6.147
p_planar_tor5.8
p_multtor_nbd0.316
p_singtor_nbd0.237
p_chiral_restr0.218
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor35.4
p_staggered_tor22.3
p_scangle_it13.14
p_scbond_it12.234
p_mcangle_it7.652
p_mcbond_it6.147
p_planar_tor5.8
p_multtor_nbd0.316
p_singtor_nbd0.237
p_chiral_restr0.218
p_xyhbond_nbd0.216
p_planar_d0.082
p_angle_d0.063
p_bond_d0.022
p_plane_restr0.0188
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms48034
Nucleic Acid Atoms
Solvent Atoms1169
Heterogen Atoms75

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing