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AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH BUTYRAMIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PEA PDB ENTRY 1PEA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7 MICROBATCH CRYSTALLISATION. WELLS CONTAIN 12.8MG/ML PAC181-AMIC, 5MM BUTYRAMIDE, 1.36M NA CITRATE, 100MM HEPES-NAOH PH7.5, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.15 α = 90 b = 104.15 β = 90 c = 65.68 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1996-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 38 97.8 0.098 4.5 2.7 10389 1 54.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.84 97.2 0.185 3.8 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PEA 2.7 15 9546 477 97 0.269 0.2445 0.314 0.3066 RANDOM 27.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.4 p_staggered_tor 20.3 p_special_tor 15 p_scangle_it 3.012 p_planar_tor 2.8 p_scbond_it 1.967 p_mcangle_it 1.665 p_mcbond_it 0.97 p_multtor_nbd 0.254 p_singtor_nbd 0.193
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.4 p_staggered_tor 20.3 p_special_tor 15 p_scangle_it 3.012 p_planar_tor 2.8 p_scbond_it 1.967 p_mcangle_it 1.665 p_mcbond_it 0.97 p_multtor_nbd 0.254 p_singtor_nbd 0.193 p_xyhbond_nbd 0.181 p_chiral_restr 0.099 p_angle_d 0.03 p_planar_d 0.029 p_plane_restr 0.0166 p_bond_d 0.007 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2914 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing