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OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KRK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OLB PDB ENTRY 1OLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.45 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.926 α = 90 b = 75.446 β = 90 c = 70.061 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE R-AXIS IIC MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 95.2 0.097 5.6 5.6 52404 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 72.4 0.309 1.2 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OLB 1.8 15 55059 2614 95.2 0.17586 0.22194 20.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.8 p_staggered_tor 14 p_scangle_it 4.148 p_planar_tor 3.6 p_scbond_it 2.99 p_mcangle_it 2.772 p_mcbond_it 2.225 p_multtor_nbd 0.243 p_singtor_nbd 0.175 p_xyhbond_nbd 0.121
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.8 p_staggered_tor 14 p_scangle_it 4.148 p_planar_tor 3.6 p_scbond_it 2.99 p_mcangle_it 2.772 p_mcbond_it 2.225 p_multtor_nbd 0.243 p_singtor_nbd 0.175 p_xyhbond_nbd 0.121 p_planar_d 0.027 p_angle_d 0.026 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4195 Nucleic Acid Atoms Solvent Atoms 456 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing