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Isopenicillin N synthase from Aspergillus nidulans (IP1 - Fe complex)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BK0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 1.8M LITHIUM SULPHATE, 100MM TRIS/HCL (PH8.5), (5MM FERROUS SULPHATE, 70 MM ACMC, 50MG/ML IPNS), pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.226 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.67 α = 90 b = 71.91 β = 90 c = 101.73 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 25 92.2 0.0078 8.4 2.4 69285
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 43 0.29 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BK0 1.35 25 65506 3421 92.2 0.1309 0.1874 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 3 2516.4 3131.5
RMS Deviations Key Refinement Restraint Deviation s_rigid_bond_adp_cmpnt 0.306 s_approx_iso_adps 0.094 s_non_zero_chiral_vol 0.069 s_zero_chiral_vol 0.067 s_angle_d 0.043 s_similar_adp_cmpnt 0.036 s_bond_d 0.02 s_anti_bump_dis_restr 0.012 s_similar_dist s_from_restr_planes
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2632 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 54
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALA data scaling SHELXL phasing