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Gln48 PLA2 separated from Vipoxin from the venom of Vipera ammodytes meridionalis.
Crystallization Crystal Properties Matthews coefficient Solvent content 2.21 44.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.948 α = 90 b = 58.948 β = 90 c = 139.119 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 20703
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 10 17790 956 100 0.18899 0.18899 0.18542 0.197 0.25384 0.2536 RANDOM 24.598
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -0.74 1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.254 r_scangle_it 5.017 r_scbond_it 3.315 r_angle_refined_deg 2.09 r_mcangle_it 1.962 r_mcbond_it 1.145 r_symmetry_vdw_refined 0.253 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.254 r_scangle_it 5.017 r_scbond_it 3.315 r_angle_refined_deg 2.09 r_mcangle_it 1.962 r_mcbond_it 1.145 r_symmetry_vdw_refined 0.253 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.145 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1894 Nucleic Acid Atoms Solvent Atoms 336 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement