1Q5L
NMR structure of the substrate binding domain of DnaK bound to the peptide NRLLLTG
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
2 | 3D_15N-separated_NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
3 | H(C)CH_TOCSY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
4 | (H)CCH_TOCSY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
5 | 15N FILTERED/EDITED NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 | |
6 | 13C FILTERED/EDITED NOESY | 0.66 mM DnaK(393-507); 3.3 mM NRLLLTG; 10 mM sodium phosphate buffer, pH 7.4 | 90% H2O/10% D2O | 10 mM sodium phosphate | 7.4 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Bruker | AMX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | VNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 60 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 2.6 | varian |
2 | processing | VNMR | 2.6 | varian |
3 | processing | NMRPipe | Delaglio | |
4 | data analysis | XEASY | 3.2 | Wuthrich |
5 | structure solution | ARIA/(CNS) | 1.0 | Nilges |
6 | refinement | ARIA/(CNS) | 1.0 | Nilges |