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Phosphoglucose isomerase from Leishmania mexicana.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 291 PEG 6K, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.98 58.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.744 α = 90 b = 85.744 β = 90 c = 350.429 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH 2002-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 0.055 16.5 3.7 24333 24333
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 30 44509 23091 1181 98.74 0.19787 0.19519 0.2032 0.2498 0.2314 RANDOM 30.936
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.003 r_dihedral_angle_4_deg 18.753 r_dihedral_angle_3_deg 16.205 r_dihedral_angle_1_deg 5.976 r_scangle_it 3.875 r_scbond_it 2.315 r_angle_refined_deg 1.832 r_mcangle_it 1.708 r_angle_other_deg 1.017 r_mcbond_it 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.003 r_dihedral_angle_4_deg 18.753 r_dihedral_angle_3_deg 16.205 r_dihedral_angle_1_deg 5.976 r_scangle_it 3.875 r_scbond_it 2.315 r_angle_refined_deg 1.832 r_mcangle_it 1.708 r_angle_other_deg 1.017 r_mcbond_it 0.923 r_nbd_other 0.26 r_nbd_refined 0.234 r_symmetry_vdw_other 0.212 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.141 r_symmetry_vdw_refined 0.116 r_chiral_restr 0.107 r_nbtor_other 0.093 r_bond_refined_d 0.022 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4387 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling AMoRE phasing CNS refinement MAR345 data collection