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12-0xo-phytodienoate reductase isoform 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 297 Glycine, MEPEG 5000, triethanolamine, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.37 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.113 α = 90 b = 85.068 β = 90 c = 121.824 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH Bent cylindrical Si-mirror (Rh coating) 2003-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9790 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 90.5 0.133 0.133 5.7 6.09 55478 50628 -3 23.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 43.6 0.687 0.687 1.11 0.39 2384
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 24.92 55478 48056 2572 91.26 0.18884 0.1888 0.18635 0.1956 0.23588 0.2379 RANDOM 27.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.773 r_scangle_it 3.836 r_scbond_it 2.443 r_angle_refined_deg 1.636 r_mcangle_it 1.615 r_mcbond_it 0.92 r_angle_other_deg 0.887 r_nbd_other 0.259 r_symmetry_vdw_other 0.243 r_nbd_refined 0.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.773 r_scangle_it 3.836 r_scbond_it 2.443 r_angle_refined_deg 1.636 r_mcangle_it 1.615 r_mcbond_it 0.92 r_angle_other_deg 0.887 r_nbd_other 0.259 r_symmetry_vdw_other 0.243 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.211 r_xyhbond_nbd_refined 0.168 r_symmetry_vdw_refined 0.158 r_chiral_restr 0.103 r_nbtor_other 0.093 r_bond_refined_d 0.02 r_gen_planes_other 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5634 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms 62
Software Software Software Name Purpose MAR345 data collection SCALEPACK data scaling SOMORE model building REFMAC refinement SOMORE phasing