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Crystal Structure of Pasteurella haemolytica Apo Ferric ion-Binding Protein A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 277 PEG 3350, magnesium formate, pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.159 α = 90 b = 189.327 β = 90 c = 45.765 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.00 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 95.35 95 123103 116923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 93.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 35.28 123103 116923 6170 93.34 0.1721 0.17098 0.1809 0.19511 0.2067 RANDOM 12.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.58 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.805 r_scangle_it 2.26 r_scbond_it 1.374 r_sphericity_bonded 1.313 r_sphericity_free 1.277 r_angle_refined_deg 1.094 r_mcangle_it 1.003 r_angle_other_deg 0.755 r_rigid_bond_restr 0.676 r_mcbond_it 0.578
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.805 r_scangle_it 2.26 r_scbond_it 1.374 r_sphericity_bonded 1.313 r_sphericity_free 1.277 r_angle_refined_deg 1.094 r_mcangle_it 1.003 r_angle_other_deg 0.755 r_rigid_bond_restr 0.676 r_mcbond_it 0.578 r_symmetry_vdw_other 0.267 r_nbd_other 0.227 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.126 r_symmetry_hbond_refined 0.082 r_nbtor_other 0.08 r_xyhbond_nbd_refined 0.076 r_chiral_restr 0.068 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2521 Nucleic Acid Atoms Solvent Atoms 618 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling MOLREP phasing