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Crystal structure of rabbit 20alpha hyroxysteroid dehydrogenase in ternary complex with NADP and testosterone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 PEG4000, ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.17 43.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.21 α = 90 b = 84.046 β = 91.17 c = 66.249 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 IMAGE PLATE RIGAKU RAXIS IIC 2002-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 5.06 81288 37115 7.2 13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 59
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.08 20 2.1 76308 33320 1754 93.54 0.22918 0.22643 0.2262 0.28008 0.2779 RANDOM 15.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.09 0.16 0.06 5.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.177 r_scangle_it 3.427 r_scbond_it 2.423 r_angle_refined_deg 2.013 r_mcangle_it 1.388 r_mcbond_it 0.915 r_symmetry_vdw_refined 0.561 r_symmetry_hbond_refined 0.477 r_nbd_refined 0.295 r_xyhbond_nbd_refined 0.265
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.177 r_scangle_it 3.427 r_scbond_it 2.423 r_angle_refined_deg 2.013 r_mcangle_it 1.388 r_mcbond_it 0.915 r_symmetry_vdw_refined 0.561 r_symmetry_hbond_refined 0.477 r_nbd_refined 0.295 r_xyhbond_nbd_refined 0.265 r_chiral_restr 0.134 r_bond_refined_d 0.025 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5111 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms 122
Software Software Software Name Purpose REFMAC refinement XDS data scaling AMoRE phasing