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Crystal structure of the zinc finger associated domain of the Drosophila transcription factor Grauzone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 295 PEG 4000, ammonium acetate, sodium citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.48 50.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.66 α = 90 b = 48.66 β = 90 c = 82.123 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2003-02-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.0500, 1.2828 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 97 0.042 36.7 4.6 7120 6907 1 52.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.7 0.447 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 15 2 6775 6590 322 97.27 0.24204 0.24083 0.2484 0.26691 RANDOM 45.879
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.19 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.175 r_scangle_it 5.211 r_mcangle_it 3.556 r_scbond_it 3.259 r_mcbond_it 1.979 r_angle_refined_deg 1.206 r_angle_other_deg 0.834 r_nbd_other 0.234 r_xyhbond_nbd_refined 0.219 r_nbd_refined 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.175 r_scangle_it 5.211 r_mcangle_it 3.556 r_scbond_it 3.259 r_mcbond_it 1.979 r_angle_refined_deg 1.206 r_angle_other_deg 0.834 r_nbd_other 0.234 r_xyhbond_nbd_refined 0.219 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.197 r_symmetry_vdw_other 0.196 r_symmetry_hbond_refined 0.135 r_nbtor_other 0.085 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 642 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling MLPHARE phasing CNS refinement HKL-2000 data collection HKL-2000 data reduction