1PV3
NMR Solution Structure of the Avian FAT-domain of Focal Adhesion Kinase
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.85 mM Focal Adhesion Targeting Domain U-15N,13C, 25 mM Tris-Maleate, 0.1 % NaN3, 1.0 uM PPACK, 0.5 mg/mL Pefabloc 90% H2O, 10% D2O | 90% H2O/10% D2O | 150 mM NaCl | 6.0 | ambient | 310 | |
2 | 3D_15N-separated_NOESY | 0.85 mM Focal Adhesion Targeting Domain U-15N,13C, 25 mM Tris-Maleate, 0.1 % NaN3, 1.0 uM PPACK, 0.5 mg/mL Pefabloc 90% H2O, 10% D2O | 90% H2O/10% D2O | 150 mM NaCl | 6.0 | ambient | 310 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry simulated annealing | 3049 total restraints: 1627 unambiguous NOE-derived distance constraints, 1078 ambiguous NOE-derived distance constraints, 83 dihedral angle restraints, 97 distance restraints from hydrogen bonds, 164 residual dipolar coupling restraints | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with acceptable covalent geometry,structures with the lowest energy |
Conformers Calculated Total Number | 25 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | PDB entry 1K40 was used as a starting template for structure calculations. The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1.0 | Delaglio, F., Grzesiek, S., Vuister., G., Zhu, G., Pfeifer, J., Bax, A. |
2 | data analysis | NMRView | 5.0.4 | Johnson, B., Blevins, R.A. |
3 | structure solution | CNS | 1.1 | Brunger, A.T.,Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve. R.W., Jiang, J.S., Kuszewski, J., Nilges, M.,Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T., Warren, G.L. |
4 | structure solution | ARIA | 1.2 | Nilges, M. |
5 | refinement | ARIA | 1.2 | Nilges, M. |