1PU1
Solution structure of the Hypothetical protein mth677 from Methanothermobacter Thermautotrophicus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.2mM U-15N protein, 25mM sodium phosphate buffer pH 7.0, 450mM NaCl, 10mM DTT, 20uM ZnCl2, 1mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
2 | 4D-13C-separated_NOESY | 1.0mM U-15N,13C protein, 25mM sodium phosphate buffer pH 7.0, 450mM NaCl, 10mM DTT, 20uM ZnCl2, 1mM benzamidine | 100% D2O | 7.0 | ambient | 298 | ||
3 | 3D_15N-separated_NOESY | 1.2mM U-15N protein, 25mM sodium phosphate buffer pH 7.0, 450mM NaCl, 10mM DTT, 20uM ZnCl2, 1mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
4 | HNHB | 1.2mM U-15N protein, 25mM sodium phosphate buffer pH 7.0, 450mM NaCl, 10mM DTT, 20uM ZnCl2, 1mM benzamidine, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry plus molecular mechanics | NOE derived distance constraints: 1020, Hydrogen bond constraints: 44, Angle constraints: 165 | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 34 |
Conformers Submitted Total Number | 30 |
Representative Model | 22 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | Bruker |
2 | processing | NMRPipe | 2.2 | Delaglio |
3 | data analysis | NMRView | 4 | Johnson |
4 | structure solution | CYANA | 1.0.5 | Guentert |
5 | refinement | Amber | 7.0 | UCSF |