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Crystal structure of levansucrase (E342A) complexed with sucrose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OYG PDB ENTRY 1oyg
Crystallization Crystal Properties Matthews coefficient Solvent content 2.11 41.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.241 α = 90 b = 66.951 β = 90 c = 123.956 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAC Science DIP-2030B 2003-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 30 98.2 26171 26171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.07 2.14 96.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1oyg 2.1 30 23912 23912 1275 98.37 0.19098 0.1909 0.18876 0.1963 0.23191 0.2411 RANDOM 19.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.29 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.634 r_angle_refined_deg 1.119 r_scangle_it 1.004 r_angle_other_deg 0.75 r_scbond_it 0.67 r_mcangle_it 0.359 r_symmetry_vdw_refined 0.259 r_symmetry_vdw_other 0.257 r_nbd_other 0.234 r_mcbond_it 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.634 r_angle_refined_deg 1.119 r_scangle_it 1.004 r_angle_other_deg 0.75 r_scbond_it 0.67 r_mcangle_it 0.359 r_symmetry_vdw_refined 0.259 r_symmetry_vdw_other 0.257 r_nbd_other 0.234 r_mcbond_it 0.212 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.144 r_xyhbond_nbd_refined 0.136 r_nbtor_other 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3438 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing