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HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Thyroid hormone receptor beta ligand binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 isopropanol, peg 4000, hepes, glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.29 46.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.722 α = 90 b = 103.262 β = 90 c = 176.002 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2002-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 40.49 99.9 0.084 7.6 3.4 27198 27153 63.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.95 99.7 0.402 1.9 3.3 3882
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Thyroid hormone receptor beta ligand binding domain 2.8 40 27198 25718 1381 99.91 0.19861 0.19861 0.19526 0.2423 0.2617 0.2385 RANDOM 24.302
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 1.29 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.804 r_scangle_it 3.05 r_scbond_it 1.659 r_angle_refined_deg 1.49 r_mcangle_it 1.145 r_angle_other_deg 0.842 r_mcbond_it 0.581 r_symmetry_vdw_other 0.243 r_nbd_other 0.224 r_nbd_refined 0.215
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.804 r_scangle_it 3.05 r_scbond_it 1.659 r_angle_refined_deg 1.49 r_mcangle_it 1.145 r_angle_other_deg 0.842 r_mcbond_it 0.581 r_symmetry_vdw_other 0.243 r_nbd_other 0.224 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.126 r_nbtor_other 0.088 r_chiral_restr 0.074 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7477 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing