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HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317 COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Thyroid hormone receptor beta ligand binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 isopropanol, peg 4000, hepes, glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.31 46.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.866 α = 90 b = 103.606 β = 90 c = 176.378 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 toroidal mirrors 2002-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 55.84 100 0.276 5 3.7 63700 63700 35.44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 100 0.066 2.7 3.7 9212
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Thyroid hormone receptor beta ligand binding domain 2.1 55.84 63700 60499 3201 99.73 0.21626 0.21626 0.21424 0.2693 0.25441 0.2683 RANDOM 20.228
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.4 0.32 -1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.126 r_scangle_it 3.47 r_scbond_it 2.093 r_mcangle_it 1.418 r_angle_refined_deg 1.376 r_angle_other_deg 0.841 r_mcbond_it 0.75 r_symmetry_vdw_other 0.28 r_nbd_other 0.226 r_nbd_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.126 r_scangle_it 3.47 r_scbond_it 2.093 r_mcangle_it 1.418 r_angle_refined_deg 1.376 r_angle_other_deg 0.841 r_mcbond_it 0.75 r_symmetry_vdw_other 0.28 r_nbd_other 0.226 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.2 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.177 r_nbtor_other 0.087 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7474 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing